Glycoside Hydrolases of the Obligate Methanotroph  Methyloferula stellata : an Unusual Evolutionary Strategy not Involving Distant Lateral Transfers

D. G. Naumoff; Наумов Д. Г.; S. N. Dedysh; Дедыш С. Н.

doi:10.31857/S002636562260078X

Glycoside Hydrolases of the Obligate Methanotroph Methyloferula stellata: an Unusual Evolutionary Strategy not Involving Distant Lateral Transfers

作者: Naumoff D.G.¹, Dedysh S.N.¹
隶属关系:
1. Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences
期: 卷 92, 编号 3 (2023)
页面: 243-249
栏目: EXPERIMENTAL ARTICLES
URL: https://journal-vniispk.ru/0026-3656/article/view/138208
DOI: https://doi.org/10.31857/S002636562260078X
EDN: https://elibrary.ru/FWAFVA
ID: 138208

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详细

Abstract—

The genome of the obligately methanotrophic bacterium Methyloferula stellata AR4 encodes thirty glycoside hydrolases. The closest homologues for most of these proteins belong to other members of the class Alphaproteobacteria. Two exceptions are represented by the genes encoding glycoside hydrolases of the families GH39 and GH65, which presumably appeared in M. stellata AR4 due to the lateral transfer from distantly related bacteria. This work was devoted to the study of the evolutionary history of these two genes. In the case of a member of the GH65 family of glycoside hydrolases, this scenario was not confirmed. Kojibiose phosphorylase encoded by this gene is common among Alphaproteobacteria. The suggested lateral transfer of the corresponding gene had an opposite direction, into one of the evolutionary lineages of the class Betaproteobacteria. The potential glycoside hydrolase of the GH39 family was shown to be the only one which gene is not of proteobacterial origin. The role of lateral transfers in the evolution of glycoside hydrolases and their homologues in methanotrophs and other bacteria is discussed.

关键词

glycoside hydrolase, glycoside phosphorylase, GH39 family, GH65 family, methanotrophs, Methyloferula stellata, Beijerinckiaceae, Burkholderiaceae, protein phylogenetic tree, protein evolution, lateral gene transfer, search for homologues, gene annotation

作者简介

D. Naumoff

Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences

编辑信件的主要联系方式.
Email: daniil_naumoff@yahoo.com
Russia, 119071, Moscow

S. Dedysh

Winogradsky Institute of Microbiology, Research Center of Biotechnology, Russian Academy of Sciences

Email: daniil_naumoff@yahoo.com
Russia, 119071, Moscow

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