


Том 85, № 4 (2024)
Articles
Genetic species concept as applied to multilocus nuclear data
Аннотация
Using the example of multiple species groups and species complexes, it is empirically shown that the resolving power of a set of 10–20 nuclear loci is insufficient for the study of their genetic differentiation. For the adequate analysis of phylogenetic relationships (including reticulation events) and assessment of divergence levels within such groups of closely related species, it is necessary to multiply the number of nuclear loci and transit to high-throughput next-generation deep sequencing. However, the question of the genomic coverage required for the purposes of such study remains open. In other words, exactly how many genes in a set are needed to measure the genetic distance resolving the relationships between branches on the phylogenetic tree reconstruction of a complex of closely related species? We chose protein-coding sequences as a standard set of markers. Distances for 160–180 genes with a combined length of 270 000–300 000 bp were used to estimate the divergence levels of closely related mammalian species. In most cases, the interspecific distances are within the 0.15–0.75% range (median of 0.33%). The range of distances between semi-species is 0.12–0.28% (median of 0.14%). Intraspecific distances are always lower than 0.11%. Rodents show higher values of interspecific distances, 0.25–2.3% (median of 0.72%); distances between half-species range from 0.1 to 0.35%. To determine the number of nuclear loci and their combined length sufficient for the calculation of a genetic distance, we use simulations based on a model that included the following parameters: the average rate of gene evolution, its dispersion, and the level of polymorphism in the modern and ancestral populations. We performed a preliminary analysis of the distribution of loci evolution rates among mammalian taxa based on the data on ~50 thousand nuclear markers. It is shown that a relative error of 10–15%, comparable to the same value for mitochondrial distances between close species based on individual genes (approximately 1000 bp in length), is achieved using approximately 100 loci of 300 bp in length. Based on these data, we propose the following working hypothesis: the threshold of interspecific/intraspecific genetic distance calculated on the basis of the exons most frequently used in mammalian molecular phylogenetics is approximately 0.15%. This hypothesis assumes a species rank for the forms in statu nascendi. It should be noted that not all “good” species have significant genetic distances, since in some cases reproductive barriers form faster than substitutions accumulate in the genome.



The role of micronuclei in chromatin elimination
Аннотация
Micronuclei are the extra-nuclear chromatin compartments separated from the primary nucleus and surrounded by their own nuclear envelope. For a long time it has been thought that micronuclei is the final stage of the pathological process in a cell. They have been used as biomarkers of the influence of genotoxic factors as well as of genome instability in various diseases. Nowadays, it is demonstrated that micronuclei could be involved in the cellular activities, affect the nuclear genome and lead to the changes in cell and tissue physiology. It is known that the formation of micronuclei is one of the steps in selective chromatin elimination in the ontogenesis of plant and animal species. The regions to be marked and eliminated from cell nucleus are recognized at the level of genome. This process is often accompanied by modifications with the heterochromatin formation, changes in the chromosome condensation and in the position of chromosomes in the nucleus. The processes observed in selective and non-selective chromatin elimination are similar to a great extent. The fact that the role of micronuclei in the cell functioning is not well-known yet, and the composition of the micronuclei and the ways of chromatin elimination could influence their role in the development of the pathogenesis, emphasizes the importance of additional studies for a more profound investigation of this phenomenon.



Influence of Raoul Husson’s neurochronaxic theory for the development of research on the physiological mechanisms of voice production in the Soviet Union (1950–1970s)
Аннотация
The influence of the neurochronaxic theory of phonation of the French physiologist Raoul Husson (1901–1967) on the development of research on voice formation in the Soviet Union, mainly in the 1950–1970s, is discussed. Husson contrasted the neurochronaxic theory with the traditional myoelastic theory of voice formation. The myoelastic theory considers the vocal folds as a self-oscillatory system. Vibrations are caused by the energy of the air flow. According to Husson’s concept, vibrations of the vocal cords do not depend on subglottic pressure. The frequency of vibration of the vocal cords corresponds to the frequency of impulses arriving along the recurrent nerve. To explain the high frequency of vibration of the vocal cords, Husson used Wever’s “Volley Principle”. According to this principle, the activity of each subsequent nerve fiber occurs during the refractory phase of the previous fiber. The responses of all nerve fibers are summed up into a common high-frequency oscillation. In 1950–1970s, Soviet physiologists took an active part in testing the new concept proposed by Husson. They came to the conclusion that both mechanisms, myoelastic and neurochronaxic, are involved in the functioning of the vocal apparatus. But the recurrent nerve does not directly control the vibrations of the vocal cords, but indirectly. Žhinkin called this control system the “code principle,” when a command is sent to the vocal cords to change their physical characteristics, changing the properties of the self-oscillating system.



Modeling of the modern climatic range of Cydalima perspectalis (Lepidoptera, Crambidae) in Eurasia
Аннотация
Modeling of the modern climatic range of a dangerous plant pest of the genus Buxus L. box tree moth Cydalima perspectalis (Walker, 1859) is carried out in order to determine possible territories of its further expansion in Eurasia. Information on the loci of actual C. perspectalis detection both in native (East and South Asia) and invasive (Europe and West Asia) parts of the range was collected from various sources (species distribution databases and publications). Six bioclimatic (three temperature and three humidity) parameters are used as distribution predictors. Original methods for determining the number of pseudo-absence points and their selective generation are developed and applied. The final classification and partitioning of the space of bioclimatic factors is carried out using gradient boosting. The modern Eurasian climatic range of the box tree moth is calculated and mapped. It is shown that the invasion has not yet reached its limits and there are a number of territories in Eurasia where climatic conditions are favorable for the emergence of C. perspectalis populations both in the native part of the range (certain southern and eastern regions of China, the DPRK, the southern foothills of the Himalayas) and in its invasive part (Northern and Eastern Europe, Caucasus, and Turkey). A comparative assessment of the importance of different climatic factors in determining the box tree moth distribution area is given. It has been found out that the sum of the driest month precipitation is of greatest importance for constructing a model of the C. perspectalis climatic range (47.6%). A significant difference in climatic conditions between the native and invasive parts of the range is revealed and assumptions about the possible causes of its occurrence are made.



Breeding success of the interspecies hybrids: Reduced fertility in the hybridogeneous magpie population (Pica pica × Pica serica, Aves)
Аннотация
Data on the breeding success of hybrids, collected during direct field observations, are principally important for understanding nature of the species isolating factors and future fate of the hybridogeneous populations. In the zone of secondary contact between Eurasian magpie Pica pica and Oriental magpie Pica serica, emerging right now, limited hybridization occurs, what has been shown in our reported data on nuclear single nucleotide polymorphisms (SNP). In the present work, we have analyzed composition of 119 nesting pairs and content of 89 nests in the hybridogeneous population of P. pica leucoptera × P. serica jankowskii in Eastern Mongolia, then in the recent contact zone in Eastern Transbaikalia (South Siberia) and the relatively pure populations of P. p. leucoptera in Central Transbaikalia and P. s. jankowskii in Northeast China. In the hybridogeneous population of Mongolia, significantly increased portion of nonviable clutches with all dead eggs was recorded, as well as a portion of partly dead clutches, compared with the data on the pure population of Central Transbaikalia. The egg mortality was found to be much less dramatic in the population of the Eastern Transbaikalia, where hybridization is less pronounced than in Mongolia. Several possible mechanisms of genetic incompatibilities breaking the reproductive barriers are discussed. The future fate of this magpie contact zone is considered, taking in account selection against hybridization which was revealed in this study. Among possible scenarios, reinforcement of prezygotic isolation may occur, i. e., in the species-specific calls. It is possible that a kind of mosaic hybrid zone with some features of tension zone will appear. Monitoring of the unique situation with the emerging zone of contact and hybridization of two young magpie species is needed, as a necessary addition to genomic studies.


