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Vol 52, No 6 (2018)

Article

Accumulation of Indolyl-3-Acetic and Abscisic Acids by “Hairy” Roots of Artemisia vulgaris

Kosakivska I.V., Voytenko L.V., Drobot K.O., Matvieieva N.A.

Abstract

High-performance liquid chromatography–mass spectrometry has been used to study the character of the accumulation and balance of endogenous indolyl-3-acetic (IAA) and abscisic (ABA) acids in the “hairy” roots of Artemisia vulgaris obtained by transformation with Agrobacterium rhizogenes agropine strain A4. The free IAA content was significantly higher than the level of the conjugated form of the hormone. The highest amount of the active IAA form (554.4 ± 27.7 ng/g fresh weight) was detected in line no. 2. The free form of ABA predominated in the roots of control samples, where its level was significantly higher than in the transformed lines. The “hairy” roots accumulated a conjugated form of ABA, and the highest content of this compound amounted to 459.6 ± 23.0 ng/g of fresh weight (in line no. 4). The architecture of the transformed roots was marked by significant branching and lateral root formation; active accumulation of biomass was detected. The results obtained demonstrate changes in the endogenous phytohormone balance in the “hairy” A. vulgaris roots, namely, a trend to predomination of the free IAA form and a significant decrease of the ABA content.

Cytology and Genetics. 2018;52(6):395-399
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Methyl Jasmonate and Nitric Oxide in Regulation of the Stomatal Apparatus of Arabidopsis thaliana

Yastreb T.O., Kolupaev Y.E., Kokorev A.I., Horielova E.I., Dmitriev A.P.

Abstract

The effect of methyl jasmonate, donors and antagonists of nitric oxide (NO) on the state of stomata of Arabidopsis thaliana plants (Col-0) was studied. Treatment of the epidermis of leaves with a 50–400 μM solution of methyl jasmonate (MJ) caused a decrease in the size of the stomatal aperture and the percentage of open stomata. These effects were completely eliminated after preliminary treatment of epidermis cells with NO scavenger PTIO (2-phenyl-4,4,5,5-tetramethylimidazoline-1-oxyl-3-oxide) and partially after treatment with inhibitors of animal NO synthase (NG-nitro-L-arginine methyl ester, L-NAME) and nitrate reductase (sodium tungstate). NO donors (L-arginine and sodium nitrite) in concentrations of 0.5–2.0 mM also caused a decrease in the number of open stomata and the size of the stomatal aperture. The action of L‑arginine on the state of stomata was leveled by pretreatment of cells with L-NAME, and effects of sodium nitrite were eliminated by preaction of sodium tungstate. A conclusion about the possible participation of nitrogen oxide, forming both as the result of L-arginine oxidation and during nitrate/nitrite reduction, in the regulation of the stomatal apparatus and about its role in the realization of an MJ effect on state of stomata in Arabidopsis thaliana was made.

Cytology and Genetics. 2018;52(6):400-405
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The Zebrafish as a New Model System for Experimental Biology

Korzh V., Kondrychyn I., Winata C.

Abstract

The emergence of genomics and its use in combination with high-resolution bioimaging for the study of animal development mechanisms provide scientists with information on gene sets and regulation thereof during development. This enabled the identification of the core set of transcription factors involved in the development of invertebrates and vertebrates. This approach was particularly efficient due to the widespread use of transparent embryos of zebrafish and other bony fishes in these studies. These embryos can be used as model systems for the analysis of vertebrate development, even at the level of individual cells, as the various processes of development unfold in vivo.

Cytology and Genetics. 2018;52(6):406-415
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Molecular Organization of 5S Ribosomal DNА of Deschapmpsia antarctica

Ishchenko O.O., Panchuk І.І., Andreev І.O., Kunakh V.A., Volkov R.A.

Abstract

Deschampsіa antarctіca, one of the two angiosperm species growing in the extreme conditions of Antarctica, is a unique model for studying the relationship between genetic polymorphism and such factors of evolution as isolation, migration and adaptation to new environmental conditions. Molecular markers represent a useful tool for the investigation of these questions. To examine the potential of 5S rDNA to be used for the discrimination of D. antarctica populations we cloned and sequenced this genomic region for plants from three populations of this species from Maritime Antarctica. It was shown that in the genome of D. antarctica at least two structural classes of 5S rDNA are present, which differ by numerous base substitutions and insertions/deletions in the intergenic spacer. Based on this structural polymorphism we propose to apply this region for the evaluation of the intraspecific genetic diversity of D. antarctica.

Cytology and Genetics. 2018;52(6):416-421
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Nucleus Fragmentations in Diploid-Polyploid Populations of Spined-Loaches of the Genus Cobitis Linnaeus, 1758

Mezhzherin S.V., Tsyba A.A., Saliy T.V., Pavlenko L.I.

Abstract

Analysis of 11 diploid-polyploid samples of spined loaches of the genus Cobitis from the aquatic systems of Ukraine showed that the increase in the number of micronuclei in red blood cells positively correlates with the ploidy and cell size. In diploid individuals of parental species, micronuclei cells average 0.12%, whereas they average 0.52, 1.39, and 4.72% in hybrid triploids, tetraploids, and probable pentaploids, respectively. Since triploid and tetraploid specimens in joint colonies tend to prevail over diploid ones, it can be concluded that minor disturbances in the genetic apparatus do not significantly affect the fitness, whereas an increase in the number of chromosomal sets over four is already accompanied by dysfunctions critical to normal life activity. Apparently, it is this circumstance that has led to the absence or extreme rarity of the pentaploid states in the clonal vertebrates, whereas penta-, hexa-, octo-, and even decaploid states are common in the lower invertebrates, for example earthworms. The latter is probably due to the fact that the minimum size of the genome in earthworms is several times smaller than in teleosts, which allows lower invertebrates to increase the number of chromosomal sets by more than fourfold.

Cytology and Genetics. 2018;52(6):422-427
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Motif-Based Prediction of Plant Tubulin Phosphorylation Sites Associated with Calcium-Dependent Protein Kinases in Arabidopsis thaliana

Karpov P.A., Novozhylov D.O., Isayenkov S.V., Blume Y.B.

Abstract

New motifs for phosphorylation sites associated with calcium-dependent protein kinases were developed using 494 sites experimentally proved in mammalians. Subsequent motif-based search revealed consensus regions in α-, β-, and γ-tubulin from Arabidopsis thaliana. The analysis of selected candidate sites and comparison of sequences and structures of homological mammalian and plant protein kinases were performed. Bioinformatic analysis reveals Arabidopsis protein kinases CPK20 (At2g38910), CPK21 (AT4G04720), and GRIK2 (At5g60550) as probable contributors of the plant tubulin code.

Cytology and Genetics. 2018;52(6):428-439
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Studying Recombination between the 1RS Arms from the Rye Petkus and Insave Involved in the 1BL.1RS and 1AL.1RS Translocations using Storage Protein Loci as Genetic Markers

Kozub N.A., Sozinov I.A., Karelov A.V., Bidnyk H.Y., Demianova N.A., Sozinova O.I., Blume Y.B., Sozinov A.A.

Abstract

A population of F6 recombinant inbred lines from the cross between winter common wheat lines with the wheat-rye translocations 1BL.1RS (of the Kavkaz type) and 1АL.1RS (of the Amigo type), B-16 × 7086 AR, was produced. Using the storage protein loci Gli-R1, Gli-A1, and Gli-B1 as genetic markers, lines with recombinant 1RS (12%) were identified and the frequency of recombination between 1RS involved in different translocations was determined as 7%. 1RS from Amigo was demonstrated to carry a gene encoding the secalin “a”, which can be identified on SDS electrophoregrams under the y-subunit encoded by the Glu-D1 locus. The secalin “a” was also revealed in the cultivar MV Táltos, which was shown to carry the 1BL.1RS translocation with secalin alleles of the Amigo type. The gene encoding the secalin “a” was found to be allelic to the gene Sec-Nx from the rye Voronezhske SGI. The frequency of recombination between the loci Gli-R1 and Sec-N depends on the nature of the material analyzed and amounts about 10% (the genetic distance of 10 cM) in the cross MV Táltos × CWX (the lines with different 1BL.1RS translocations). Such a distance suggests that important disease and pest resistance genes, in particular stem rust resistance genes, are within the region flanked by these loci. Because of this the secalin loci are convenient for primary screening for recombinant 1RS arms with new combinations of disease and pest resistance genes.

Cytology and Genetics. 2018;52(6):440-447
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Molecular Genetic Evaluation of Ukrainian Flax Cultivar Homogeneity Based on Intron Length Polymorphism of Actin Genes and Microsatellite Loci

Postovoitova A.S., Yotka O.Y., Pirko Y.V., Blume Y.B.

Abstract

The intron length polymorphism of actin genes and microsatellite loci was investigated to evaluate the genetic homogeneity of flax cultivars of Ukrainian breeding. It is established that the vast majority of flax cultivars are genetically heterogeneous. The cultivars Esman, Siverskyi, and Glazur, bred at the Institute of Bast Crops of the National Academy of Agricultural Sciences of Ukraine, were found to be genetically homogeneous according to the results of analysis of the intron length polymorphism of actin genes and microsatellite markers. It was shown that the intron length polymorphism of actin genes is not a less-informative marker system for genetic profiling than popular SSR markers. Data were obtained confirming the expediency of further simultaneous use of the mentioned DNA marker systems to evaluate the genetic diversity of flax cultivars.

Cytology and Genetics. 2018;52(6):448-460
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Frequency of Spontaneous and Radiation-Induced Chromosomal Aberrations in Peripheral Blood Lymphocytes of Individuals of Different Ages

Shemetun O.V., Talan O.A., Demchenko O.M., Kurinnyi D.A., Papuga M.S., Pilinska M.A.

Abstract

The frequency of spontaneous and X-ray-induced (0.25 Gy) in vitro chromosomal aberrations, as well as the level of chromosomal instability as a result of the bystander effect, in the blood lymphocytes of individuals aged from 12 to 102 years has been investigated using GTG staining of human metaphase chromosomes. The average group frequency of spontaneous chromosomal aberrations in adolescents (12–16 years), middle-aged people (33–52 years), and centenarians (90–102 years) was identical (p > 0.05), whereas it was higher in elderly people (60–70 years) due to increase of chromatid type aberrations rate (p < 0.05). In the irradiated in vitro blood lymphocytes of individuals aged 12–16 years, 33–52 years, and 90–102 years, the levels of chromosomal aberrations was not different (p > 0.05); however, the total frequency of chromosomal aberrations in individuals aged 60–70 years exceeded the value of such indices in other age groups due to the chromosomal type damages (p < 0.05). In nonirradiated blood lymphocytes of adolescents, middle-aged, and elderly individuals cocultivated with lymphocytes irradiated in vitro (0.25 Gy), the induction of the bystander effect was detected. In lymphocytes of centenarians, the development of the bystander effect was not detected.

Cytology and Genetics. 2018;52(6):461-466
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Assessment of the Utility of TRAP and EST-SSRs Markers for Genetic Diversity Analysis of Sugarcane Genotypes

Farsangi F.J., Thorat A.S., Devarumath R.M.

Abstract

The TRAP and EST-SSRs technique were utilized for assessing the genetic diversity of 55 sugarcane genotypes (28 wildtypes and 27 cultivars). The total number of polymorphic bands amplified by TRAP primers ranged from 7 to 11 with an average of 9 amplified by SuSy + Arb2, SAI + Arb1, PPDK + Arb3 and PPDK+Arb2. The polymorphism was found to be high (≥50%), ranging from 78 to 100% with an average of 87% for all the markers. Polymorphic Information content (PIC) value ranged from 0.11 (SuSy+Arb2) to 0.44 (SuSy + Arb3) primers with an average of 0.27. Also, the highest resolving power (Rp) was found 6.9 in (SAI + Arb1) between nine primers. A total 15 sets of EST-SSRs primers were used for PCR amplification, 179 amplified fragments is produced which 174 were polymorphic. The total numbers of polymorphic alleles amplified by the various EST-SSRs markers were ranged from 5 (ESSR07 and ESSR10) to 22 (ESSR09), with an average of 13.5 alleles. The polymorphism was found to be high (≥50%), ranging from 83.33 to 100% with an average of 97.2% for all the markers Polymorphic Information content (PIC) value ranged from 0.29 (ESSR15) to 0.83 (ESSR04) primers with an average of 0.56. Also, the highest resolving power (Rp) was found in 8.55 ESSR05 between 15 primers. For the TRAP nine combination primers was used for the work. A total 85 amplified fragments were produced which 74 (85%) were polymorphic. In cooperation of both the markers, dendrogram was constructed using UPGMA method from the present study. Hence, the TRAP and EST-SSRs techniques jointly helped to identify the genetic diversity of sugarcane clones/varieties which could be used in breeding program for sugarcane improvement.

Cytology and Genetics. 2018;52(6):467-477
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Enigmatic Phenomenon of Secondary Association among Bivalents in Guar (Cyamopsis tetragonoloba (L.) Taub.)

Kumar G., Singh S.

Abstract

Cytogenetical assessment of pollen mother cells of Guar (Cyamopsis tetragonoloba (L.) Taub.) in response to treatment of chemical mutagen was done. Ethyl Methane Sulphonate (EMS) revealed possession of an enigmatic behaviour among chromosomal bivalents i.e. formation of secondary association. Chromosomes exhibited a unique tendency of getting associated in close proximity and form discrete pairs. The phenomenon of secondary chromosomal association has been ascribed to the existence of similar cohesive homology or malfunctioning in chiasma formation among the associating bivalents. The association of bivalents was witnessed to be executed in either end to end fashion or sideways association. Various other chromosomal abnormalities were found, but secondary association was the preponderant abnormality which exhibited a continuous increase in its magnitude with increase in EMS concentration. Along with secondary associations, stickiness of chromosomes at anaphase was observed in considerable frequency. A significant influence of chromosomal association on the post meiotic product was also experienced, which in turn, led to influence the meiotic index. Abnormal sporads in the form of triads, dyads, monads and polyads, alongwith normal tetrad were seen. Pollen fertility percent was seen to decline from control to the highest concentration of EMS due to anomalies of preceding stages.

Cytology and Genetics. 2018;52(6):478-483
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