Ontogenez
ISSN (print): 0475-1450
Media registration certificate: No. FS 77 - 66702 dated 07/28/2016
Founder: Russian Academy of Sciences
Editor-in-Chief: Vasiliev Andrey Valentinovich
Number of issues per year: 6
Indexation: RISC, list of Higher Attestation Commissions, CrossRef, White List (level 3)
The journal "Ontogenez" is a scientific journal dedicated to development biology and related disciplines.
The journal publishes experimental, theoretical and review articles on mechanisms of development, cell differentiation and growth. We welcome works on the mechanisms of embryonic and post-embryonic development in normal and pathological conditions, performed at the molecular, cellular, tissue and organism levels.
The journal is published 6 times a year in Russian and English languages. The name of the English version is "Russian Journal of Developmental Biology".
The journal is published under the guidance of the Department of Biological Sciences of the RAS.
The journal is indexed in the following databases: Web of Science, Science Citation Index Expanded (SciSearch), Pubmed, Chemical Abstracts Service (CAS), Google Scholar, EBSCO, CSA, Academic OneFile, AGRICOLA, Biological Abstracts, BIOSIS, Current Abstracts, EMBiology Gale, INIS Atomindex, Journal Citation Reports/Science Edition, OCLC, Summon by Serial Solutions, Zoological Record.
Current Issue



Vol 56, No 1 (2025)
Original study articles
All transmitters within a single oocyte: a transcriptome analysis of embryonic transmitter systems
Abstract
The present study focuses on the potential component structure of prenerve transmitter systems in cells of pre-implantation mammalian embryos. A number of classical neurotransmitters have been shown to exhibit functional activity at the early stages of the development of multicellular organisms, including mammals. The present study provides analysis of the expression of key neurotransmitter systems components during early mouse development using accessible next-generation sequencing and transcriptomics data. The findings indicate the presence of receptors and other components of numerous transmitter systems in oocytes and embryos, encompassing serotoninergic, dopaminergic, adrenergic, cholinergic, GABAergic systems, as well as glutamate and histamine systems. The observed diversity suggests the possible convergence of different transmitter systems in the regulation of cell proliferation, differentiation and morphogenesis at the level of common terminal elements of intracellular signalling cascades and effectors. These results offer novel insights and directions for further research, particularly concerning the interactions between diverse transmitters and their function in regulating cellular differentiation and morphogenesis.



Evidence of early zygotic genome activation in development of the annelid Ophelia limacina
Abstract
A key event in early embryonic development is activation of zygotic gene expression. The mechanisms of this process have been well studied in only a few model organisms, which do not fully reflect the diversity of developmental patterns and cell fate determination strategies. Among bilaterian animals, representatives of the Spiralia clade, which exhibit remarkable conservation and determinative specification of cell lineages, remain largely unexplored in terms of genome activation. In this study, we used transcriptomic analysis to investigate zygotic genome activation in the White Sea annelid Ophelia limacina, which exhibits homoquadrant (equal) spiral cleavage. We demonstrate that zygotic transcription begins as early as the 8-cell stage, leading to the upregulation of thousands of genes, including components of the Wnt and TGF-β signaling pathways, as well as transcription factors such as Sox2—a conserved regulator of pluripotency and genome activation in vertebrates. These findings broaden our understanding of the variability of molecular mechanisms underlying zygotic genome activation and raise new questions regarding the potential evolutionary conservation of key factors involved in this process.



RNA-binding protein NXF1 is essential for the development of the nervous system of Drosophila melanogaster
Abstract
In Drosophila melanogaster, as in all Opisthokonta, the evolutionary conserved protein NXF1 (Nuclear eXport Factor 1) is responsible for nuclear export of mRNA from the nucleus to the cytoplasm. Traditionally, it is thought that after leaving the nuclear pore, the NXF1 leaves the mRNP complex and returns to the nucleus. We have shown for the first time that in Drosophila the NXF1 protein presents in the cytoplasm of various cells, including nerve cells. The cytoplasmic localisation of the NXF1 indicates that nuclear export function is not the only function of this protein. The Nxf1 gene in Drosophila has the historically established name sbr (small bristles). A number of mutations in the sbr are characterised by dominant phenotypic effects. In particular, the sbr12 mutant allele leads to abnormalities in Drosophila brain formation. Characteristic morphological defects in the neuropils of the optic lobe suggest that the NXF1 (SBR) is involved in the regulation of the spatial architecture of the fly brain, including the formation of neuropil boundaries. The evolutionary conservatism of Nxf1 opens up the possibility of studying the role of the NXF1 protein in the development of the nervous system using Drosophila as a model.



Short communications
Paraphysis and epiphysis primordia of the gecko Correlophus ciliatus at different stages of embryonic development
Abstract
The pineal complex and associated brain structures make up the epithalamus. In embryonic development, they form as an evaginations of the diencephalon roof. The structures of the epithalamus are of great interest among scientists due to their involvement in vital physiological functions of mammalian and other vertebrates. Of particular interest are animals in which the pineal complex has a photoreceptor function and includes a parapineal organ (parietal eye). It is described in lampreys, some teleosts, anurans and reptiles in which it is particularly complex. For the first time, we described the early stages of the development of the paraphysis and epiphysis in a representative of the family Diplodactylidae, the gecko Correlophus ciliatus. These primordia are evaginations of the roof of diencephalon, localized on its anterior and posterior borders. At the same time with epithalamic structures in this area of the brain, a network of blood vessels develops. The formation of a blood sinus in the parietal region of the embryo occurs by the 33rd stage of development, before the appearance of the skull. An analysis of the literature showed that the features of the development of the primordia of epithalamic structures in C. ciliatus are similar to the development of these structures in turtles, in which, like in gecko, the pineal complex does not have a parapineal organ.



Screening and transcriptomic activity of pr genes and cell cycle regulators in Pinus sylvestris L. seedlings infected with Fusarium sp.
Abstract
Transcriptome analysis of Pinus sylvestris seedlings under infection with Fusarium sp. has been performed to screen and quantify the transcripts of protective PR genes and the genes involved in cell cycle regulation (CDK, CKS, and cyclin). Under conditions of biotic stress, a decrease in transcriptional activity of the genes of cell cycle regulators was found, with increased expression of PR-gens. The results obtained expand our knowledge about genetic determination of resistance factors and evaluation of adaptive features of P. sylvestris juvenile plants to infections.



ТОЧКА ЗРЕНИЯ
Oogonial stem cells in the ovaries of adult birds
Abstract
In vertebrates, oogonial stem cells (OSCs) contribute to oogenesis in some fish, amphibians, and reptiles, enabling the production of new oocytes during each reproductive cycle. Classical literature from the 19th and 20th centuries established the prevailing notion that, in mammals and birds, the ovarian reserve is formed exclusively during embryogenesis, with OSCs absent in postnatal and adult ovaries. However, in 2004, OSCs were first identified in the ovaries of adult female mice, challenging the long-standing dogma that postnatal neo-oogenesis is impossible in mammals. Despite an increasing number of studies, this issue remains controversial. Advances in molecular and cellular techniques have significantly expanded our understanding of oogenesis across various animal groups. Notably, a recent study of adult chicken ovaries identified the presence of OSCs, further questioning traditional assumptions about ovarian biology in birds. In this review, we examine the evidence for postnatal oogenesis in this group of vertebrates.


