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Vol 54, No 8 (2018)

Problems, Prospects

Biotechnological Approaches to the Bioremediation of an Environment Polluted with Trinitrotoluene

Maksimova Y.G., Maksimov A.Y., Demakov V.A.

Abstract

The review covers the strategies for the biodegradation of a dangerous pollutant of the environment, an explosive 2,4,6-trinitrotoluene. The characteristics of the metabolism of this compound in microorganisms under aerobic and anaerobic conditions and the main enzymes involved in the transformation are described. The main class of enzymes involved in the destruction of trinitrotoluene are nitroreductases; oxidases, hydrogenases, and peroxidases may also be involved in degradation. Several approaches to the biodegradation of trinitrotoluene in the environment have been singled out and discussed: bioaugmentation of the biomass of TNT-destructor strains and consortia of microorganisms that degrade this compound; stimulation of the autochthonous microflora of polluted natural environments via the introduction of additional substrates for microorganism growth and electron donors for the reduction of trinitrotoluene; pollutant biodegradation by immobilized cells of microorganisms in bioreactors and biofilters; phytoremediation and the application of preventive measures consisting of the introduction of spores and lyophilisates of bacteria with biodegradation activity in a mixture containing nitroaromatic compounds.

Applied Biochemistry and Microbiology. 2018;54(8):767-779
pages 767-779 views

Producers, Biology, Selection, and Gene Engineering

Recombinant Tyrosinase from Verrucomicrobium spinosum: Isolation, Characteristics, and Use for the Production of a Protein with Adhesive Properties

Aksambayeva A.S., Zhaparova L.R., Shagyrova Z.S., Zhiyenbay E., Nurgozhin T.S., Ramankulov E.M., Shustov A.V.

Abstract

The recombinant tyrosinase from Verrucomicrobium spinosum bacteria has been obtained by heterologous expression in E. coli and isolated in the pure state to determine some of its biochemical properties (the kinetics of the enzymatic reaction, the effect of an inhibitor and activator, and the pH optimum). Coexpression of the genes for tyrosinase and recombinant adhesive mussel protein in one producer strain was used to introduce posttranslational modifications into the adhesive protein. These modifications involved the transformation of tyrosine residues into DOPA residues, which makes the protein capable of molecular adhesion in an aqueous medium.

Applied Biochemistry and Microbiology. 2018;54(8):780-792
pages 780-792 views

Adaptive Evolution of Escherichia coli K-12 MG1655 Grown on Ethanol and Glycerol

Eremina N.S., Slivinskaya E.A., Yampolskaya T.A., Rybak K.V., Altman I.B., Ptitsyn L.R., Stoynova N.V.

Abstract

The FEt and FGl derivatives of the E. coli K-12 MG1655 and YA1461 strains with improved ethanol and glycerol utilization, respectively, under aerobic conditions were obtained by laboratory adaptive evolution. These fitness strains have a shorter lag-phase and higher growth rate on glucose, xylose, and their mixture as compared with the parental strains. DNA sequencing and cross-transduction analysis showed that the change in the growth rate of the rifampicin-resistant fitness mutants FGl and YA1461 RifRII are caused by mutations in the rpoB gene encoding the RNA polymerase β-subunit. These mutations affect conservative amino acid segments, which leads to the amino acid substitutions of RpoBD483G and RpoBH526N, respectively.

Applied Biochemistry and Microbiology. 2018;54(8):793-799
pages 793-799 views

Biological Preparation Technology

Optimization of Microbial Synthesis of Silver Sulfide Nanoparticles

Voeikova T.A., Zhuravliova O.A., Gracheva T.S., Bulushova N.V., Ismagulova T.T., Shaitan K.V., Debabov V.G.

Abstract

The method for the biosynthesis of silver sulfide nanoparticles using a strain of Shewanella oneidensis MR-1 in an aqueous solution of silver nitrate and sodium thiosulfate salts has been optimized. Optimization is associated with the biosynthesis of nanoparticles directly in the culture medium in the presence of live cells, which increases the nanoparticle yield by 15–20% and significantly shortens the entire process of obtaining nanoparticles. It was also shown that an increase in the concentration of sodium thiosulfate and silver nitrate salts from 1 mM to 10 mM increases the nanoparticle concentration in the reaction solution, whereas the nanoparticle yield in terms of the silver introduced in the reaction decreases. The nanoparticles obtained by the optimized and the conventional methods do not differ in shape, size, and chemical composition. It was shown that the efficiency of nanoparticle biosynthesis depends on the composition of the liquid nutrient medium for S. oneidensis MR-1 cell growth. Cell culturing in nutrient medium for over 24 h fails to intensify the biosynthesis process.

Applied Biochemistry and Microbiology. 2018;54(8):800-807
pages 800-807 views

Susceptibility of Maize Mesocotyl Culture to Agrobacterium Transformation and Its in vitro Regeneration

Ovchinnikova V.N., Sotchenko V.S., Sotchenko Y.V., Varlamova N.V., Rodionova M.A., Kharchenko P.N.

Abstract

The capacity of mesocotyls to agrobacterially transform four maize lines 4766, RB-179, L-1, L-2 and the conditions for their in vitro regeneration have been studied. Regeneration of maize mesocotyls was observed in media containing various auxins and cytokinins combinations. The efficiency of the process depended on the qualitative and quantitative compositions of growth regulators. The frequency of regenerated explants and the average number of shoots that form on one explant increased with increased cytokinin 6‑BAP and defoliant Dropp (thidiazuron) concentrations in the medium. 6-BAP (3–5 mg/L) and Dropp (3 mg/L) in combination with auxins (IAA, 0.5 mg/L and 2,4-D, 2 mg/L) were shown to be most effective for the mesocotyl regeneration. The number of regenerated explants reached 59.0%, whereas the average number of shoots per explant was 7.5 after 6 weeks of cultivation. The rooting and growing of regenerated shoots was successfully carried out on MS medium supplemented with 0.2 mg/L IBA. The capacity of the mesocotyl was determined by Agrobacterium tumefaciens–mediated transformation (ATMT) with an AGL0 strain containing the pVecActI-GUS genetic construction encoding the reporter gene uidA under the control of the promoter of rice actin ActI gene and the selective hptII hygromycin resistance gene. PCR analysis demonstrated that few regenerants with resistance to the selective agent contained the insertion of the hptII antibiotic-resistance gene in their genomes. Thus, it was shown that maize mesocotyls can be used as explants for agrobacterial transformation.

Applied Biochemistry and Microbiology. 2018;54(8):808-815
pages 808-815 views

Synthesis of Silver Nanoparticles with the use of Herbaceous Plant Extracts and Effect of Nanoparticles on Bacteria

Sidorova D.E., Lipasova V.A., Nadtochenko V.A., Baranchikov A.E., Astafiev A.A., Svergunenko S.L., Koksharova O.A., Pliuta V.A., Popova A.A., Gulin A.A., Khmel I.A.

Abstract

The screening of aqueous extracts of herbaceous plants that grow on the territory of the Russian Federation with their subsequent use for the biosynthesis of silver nanoparticles (SNPs) in accordance with the principles of green chemistry has been performed. Extracts from the leaves of three plants (Mentha piperita L., Melilotus officinalis, and Archangelica officinalis) promoted efficient synthesis of SNPs, reducing the silver cation from AgNO3. SNP formation was tested on a spectrophotometer. Atomic force microscopy showed that plant extracts cause the formation of SNPs of different sizes—from 10 to 80 nm. Scanning electron microscopy revealed SNPs with various shapes and sizes; they were most commonly spherical. The obtained nanoparticles had a bactericidal effect on Escherichia coli K-12 and Pseudomonas aeruginosa PA01 (the latter being more resistant), and they suppressed the formation of E. coli biofilms. The obtained data show that the use of extracts from three herbaceous plants provides a readily available and ecologically safe method for the production of SNPs with antimicrobial activity.

Applied Biochemistry and Microbiology. 2018;54(8):816-823
pages 816-823 views