


Vol 33, No 3 (2018)
- Year: 2018
- Articles: 6
- URL: https://journal-vniispk.ru/0891-4168/issue/view/11072
Reviews
Species Diversity of Lactobacilli of Vaginal Microbiome: How to Observe It
Abstract
In this review, an attempt to trace the evolution of knowledge about the species diversity of lactobacilli in the historical perspective, from the moment of their discovery to the present, was made, taking into account the technical characteristics of experiments that can influence the final results of the research. Comparison of the data obtained using various methods of identification of lactobacilli was performed: after isolation based on preliminary cultivation using phenotypic and genotypic methods and based on direct identification of species by high-throughput sequencing and PCR methods.



The Spatial Location of Single Amino Acid Substitutions in Proteins of Cold-Adapted Influenza B Viruses and Their Impact upon Cold Adaptation
Abstract
This review summarizes the locations of unique amino acid substitutions in proteins of cold-adapted influenza B viruses, master donor viruses of live attenuated influenza vaccines: B/Ann Arbor/1/66ca, B/USSR/60/69, B/Leningrad/14/17/55, B/Victoria/2/63/87, and B/Vienna/1/99ca. The analysis is based on data on the viral sequences and information on the functional organization of internal proteins of the influenza B virus. A description is given of the main features of the structure of internal proteins from influenza B virus and a recent understanding of the functioning of their domains. We describe 35 substitutions in proteins of the ribonucleoprotein complex [PB1 (3), PB2 (10), PA (11), NP (11)] of cold-adapted influenza B viruses. In total, there are 44 amino acid positions that are considered to be associated with cold adaptation. Protein domains involved in protein–protein interactions are the most susceptible to changes. In the polymerase complex, the largest number of replacements were found in C-terminal domains of PA and PB2 proteins, forming the external parts of the polymerase complex structure and providing interaction among subunits, with cellular factors, and with the nucleoprotein (NP). Substitutions in the NP are located in the areas responsible for its oligomerization (flexible N-terminal fragment), as well as for interaction with the polymerase complex (the outer surface of the NP head and body domains). All the cold-adapted viruses had changes in the seventh segment of the genome, leading to amino acid substitutions in the matrix protein or BM2 proton channel. An analysis of the location of amino acid substitutions allows it to be theorized that an important role is played by the internal gene constellation in attenuation of cold-adapted viruses.



mRNP Transport in Eukaryotes. mRNP Export from the Nucleus
Abstract
Newly synthesized mRNA undergoes several stages of maturation, and the proteins involved in these processes form the mRNP particle. Mature mRNA passes through the nuclear pore from the nucleus to the cytoplasm, where it is transported to the ribosome and mRNA is translated into protein. Recruiting the export and transport factors to the newly synthesized mRNA occurs partly cotranscriptionally. Many of the proteins associate with mRNA from the earliest stages of transcription to its localization in the cytoplasm. Other factors perform their functions strictly at a certain stage. The protein composition of the mRNP particle changes during its adherence to the nuclear pore, passing through it, and being delivered to the site of localization in the cytoplasm. This paper describes the main participants in the export of the mRNP particle, starting with its delivery to the nuclear pore and its attachment to and translocation through the nuclear pore.



Experimental Works
Recombinant Histones as an Instrument for the Delivery of Nucleic Acids into Eukaryotic Cells
Abstract
Naturally occurring positively charged proteins can be promising carriers for nucleic acid transport in gene therapy. The most attractive alternative among them is histones. In this work, we describe expression and purification of recombinant human histones H2A and H2B and of chimeric histone H2A with HIV-1 TAT fragment (TAT-peptide). The proposed method of purification of histone proteins can significantly reduce the content of bacterial endotoxins in the target preparation, which makes it possible to use these proteins in in vivo experiments. The transfection ability of plasmid DNA complexes with core histones H2A and H2B and the chimeric histone was demonstrated. A highly specific and efficient transfection of human HT1080 cell line with the use of histones H2A and H2B was detected, whereas transfection by plasmid DNA complexes with chimeric H2A-TAT protein was observed for many cell lines.



Polymorphism of the Two Genes Encoding Catecholamine Degradation Enzymes (COMT and MAOA) in the Hadza and Datoga African Ethnic Populations
Abstract
This paper reports a molecular genetics analysis of the loci of two genes in the catecholamine degradation system (COMT rs4680 and MAOA-uVNTR) in samples from the Hadza (n = 353) and Datoga (n = 465) African ethnic populations. The results of pairwise comparisons of the COMT rs4680 locus allele and genotype frequency distribution revealed a statistically significant difference between men from the Hadza and Datoga populations (p < 0.001), while the differences observed between women from these two tribes remained below the significance threshold (p = 0.064; p = 0.076). In the Hadza population, we have also observed a statistically significant increase in the portion of G/A heterozygotes and a decrease in the portion of A/A homozygotes among women (0.576 and 0.127, respectively) compared with men (0.482 and 0.231, respectively). In the case of the MAOA-uVNTR locus, no statistical differences in the allele frequency distribution were found between the men from the two populations (p = 0.993). Women also showed no statistical differences in either allele (p = 0.229) or genotype (p = 0.057) frequencies. Moreover, in each tribe, we observed no differences in allele frequencies in the MAOA-uVNTR locus between the men and women of the same tribe. The obtained data may be further used to detect connections between gene variants and different forms of aggressive behavior in human beings.



Genotype Diversity in the Local Arkhangelsk (Russia) Neisseria gonorrhoeae Population: Emergence Mechanisms and Relation with Antimicrobial Resistance
Abstract
132 clinical isolates of N. gonorrhoeae collected in Arkhangelsk region during 2014–2016 were analyzed in accordance with the NG-MAST protocol (Neisseria gonorrhoeae Multi Antigen Sequence Typing). A diversity of the analyzed strains was represented by 53 NG-MAST sequence-types; 30 of them were new registered due to earlier unknown either porB and tbpB sequences or their combinations. Three pathways of the diversity formation are supposed: long-term circulation of some NG-MAST-types with sequential transmission via the “sexual chains” (40.1% of the total population); introduction of new molecular types (27.3%); appearance of point mutations in porB and tbpB genes with the emergence of previously unknown genotypic variants of N. gonorrhoeae (32.6%). Emerged NG-MAST types inherited the mutational profile in penA, ponA, rpsJ, gyrA, and parC genes followed by conservation of antimicrobial resistance in the local N. gonorrhoeae population, whereas these determinants do not play a significant role in contemporary gonococci molecular evolution.


