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Vol 471, No 1 (2016)

Biochemistry, Biophysics, and Molecular Biology

Distribution of rhodopin and spirilloxanthin between LH1 and LH2 complexes when incorporating carotenoid mixture into the membrane of purple sulfur bacterium Allochromatium minutissimum in vitro

Bolshakov M.A., Ashikhmin A.A., Makhneva Z.K., Moskalenko A.A.

Abstract

Carotenoid mixture enriched by rhodopin and spirilloxanthin was incorporated in LH2 and LH1 complexes from Allochromatium (Alc.) minutissimum in vitro. The maximum incorporating level was ~95%. Rhodopin (56.4%) and spirilloxanthin (13.8%) were incorporated into the LH1 complex, in contrast to the control complex, which contained primarily spirilloxanthin (66.8%). After incorporating, the LH2 complex contained rhodopin (66.7%) and didehydrorhodopin (14.6%), which was close to their content in the control (67.4 and 20.5%, respectively). Thus, it was shown that carotenoids from the total pool are not selectively incorporated into LH2 and LH1 complexes in vitro in the proportion corresponding to the carotenoid content in the complexes in vivo.

Doklady Biochemistry and Biophysics. 2016;471(1):383-386
pages 383-386 views

Neuropeptide cycloprolylglycine is an endogenous positive modulator of AMPA receptors

Gudasheva T.A., Grigoriev V.V., Koliasnikova K.N., Zamoyski V.L., Seredenin S.B.

Abstract

We have previously shown that neuropeptide cycloprolylglycine (CPG) increases the content of brain-derived neurotrophic factor (BDNF) in the culture of neuronal cells under normal conditions and in pathology. This is the first study to show that CPG at a physiological concentration of 10–6 M significantly enhances the transmembrane AMPA currents in rat cerebellar Purkinje cells. Thus, CPG is a positive endogenous modulator of AMPA receptors. It was assumed that the neuropsychotropic effects of CPG are implemented as a result of BDNF accumulation after the activation of AMPA receptors by this neuropeptide.

Doklady Biochemistry and Biophysics. 2016;471(1):387-389
pages 387-389 views

Methyl-β-cyclodextrin inhibits Ca2+-responses induced by glutoxim and molixan in macrophages

Krutetskaya Z.I., Milenina L.S., Naumova A.A., Butov S.N., Antonov V.G., Nozdrachev A.D.

Abstract

Using Fura-2AM microfluorimetry, we have shown for the first time that methyl-β-cyclodextrin, inducing cholesterol extraction from membranes and raft disruption, significantly inhibits glutoxim- and molixan-induced Ca2+-responses in rat peritoneal macrophages. The results suggest that intact rafts are necessary for signaling cascade induced by glutoxim or molixan and leading to intracellular Ca2+ concentration increase in macrophages.

Doklady Biochemistry and Biophysics. 2016;471(1):390-392
pages 390-392 views

Modeling of viral–bacterial coinfections at the molecular level using agonists of innate immunity receptors

Sviriaeva E.N., Korneev K.V., Drutskaya M.S., Nedospasov S.A., Kuprash D.V.

Abstract

The combined effect of innate immunity receptors in viral–bacterial coinfections was studied in vitro using the primary culture of murine macrophages activated by different combinations of ligands of innate immunity receptors belonging to the family of Toll-like receptors. The activation of macrophages first with a viral ligand and then with a bacterial one significantly decreased the expression of proinflammatory cytokine genes. Such attenuation of immune responses may occur during the development of bacterial complications in viral infections.

Doklady Biochemistry and Biophysics. 2016;471(1):393-395
pages 393-395 views

Alternative solution of the simplest model of enzymatic synthesis of nucleic acids by homotopy perturbation method

Fedorov A.A., Berdnikov A.S., Sochivko D.G., Varlamov D.A., Kurochkin V.E., Petrov R.V.

Abstract

Development of methods for obtaining approximate analytical solutions of nonlinear differential equations and their systems is a rapidly developing field of mathematical physics. Earlier, an approximate solution of the simplest system of kinetic enzymatic equations for calculating dynamics of complementary strands of nucleic acids was obtained. In this study, we consider an alternative approach to selecting the basic linear approximation of the used method, which makes it possible to obtain more accurate analytical solutions of the set problem.

Doklady Biochemistry and Biophysics. 2016;471(1):396-398
pages 396-398 views

Targeted mutagenesis of Drosophila RNaseZ gene by homologous recombination

Andreenkov O.V., Volkova E.I., Demakov S.A., Xie X., Dubrovsky E.B., Zhimulev I.F.

Abstract

For the first time we used a homologous recombination method to obtain complete and precise deletion of Drosophila dRNaseZ gene. In the founder line of flies in which the RNaseZ sequence was replaced by attP site, the full-length sequence of the gene was reintegrated, and its functionality was shown. This approach will allow us to generate further gene mutations in different domains of dRNaseZ protein and discover a broad spectrum and uncover functions outside of tRNA processing.

Doklady Biochemistry and Biophysics. 2016;471(1):399-402
pages 399-402 views

Functions of chromophore-containing domain in the large linker LCM- polypeptide of phycobilisome

Elanskaya I.V., Kononova I.A., Lukashev E.P., Bolychevtseva Y.V., Yanushin M.F., Stadnichuk I.N.

Abstract

In the large linker ArcE polypeptide of the phycobilisome (PBS) from the cyanobacterium Synechocystis sp. PCC 6803, the chromophore-containing 26-kDa domain was deleted with consequent disturbance of the main PBS functions. Phycobilisomes in mutant cells staying in contact with photosystem I cannot transfer energy to the photosystem II. Under the bright light conditions, the interaction of PBSs with the photoprotective orange carotenoid protein in the mutant was lost and the implementation of transition states 1 and 2 of the pigment apparatus was significantly reduced.

Doklady Biochemistry and Biophysics. 2016;471(1):403-406
pages 403-406 views

Unique configuration of genes of silicon transporter in the freshwater pennate diatom Synedra acus subsp. radians

Marchenkov A.M., Bondar A.A., Petrova D.P., Habudaev K.V., Galachyants Y.P., Zakharova Y.R., Volokitina N.A., Grachev M.A.

Abstract

The existence of the cluster of duplicated sit silicon transporter genes in the chromosome of the diatom Synedra acus subsp. radians was shown for the first time. Earlier, the localization of sit genes in the same chromosome and cluster formation caused by gene duplication was shown only for the marine raphid pennate diatom P. tricornutum. Only non-clustered sit genes were found in the genomes of other diatoms. It is reasonable to assume that sit tandem (sit-td) and sit triplet (sit-tri) genes of S. acus subsp. radians occurred as a result of gene duplication followed by divergence of gene copies.

Doklady Biochemistry and Biophysics. 2016;471(1):407-409
pages 407-409 views

Enzymatic antioxidant system of endotheliocytes

Sharapov M.G., Goncharov R.G., Gordeeva A.E., Novoselov V.I., Antonova O.A., Tikhaze A.K., Lankin V.Z.

Abstract

It is shown that endothelial cells from human umbilical vein have a reduced activity and gene expression of the “classic” antioxidant enzymes (Cu,Zn-superoxide dismutase, catalase, and Se-containing glutathione peroxidase). At the same time, a high expression level of peroxiredoxin genes was identified in the same endothelial cells, which obviously indicates the predominant involvement of these enzymes in protecting the endothelium from the damaging effect of free radical peroxidation.

Doklady Biochemistry and Biophysics. 2016;471(1):410-412
pages 410-412 views

Mi-1 gene expression in tomato plants under root-knot nematode invasion and treatment with salicylic acid

Matveeva E.M., Khasanov F.K., Zinovieva S.V., Lavrova V.V., Udalova Z.V.

Abstract

The dynamics of expression of two homologous genes Mi-1.1 and Mi-1.2 in the roots of resistant and susceptible tomato plants in non-invasion conditions and during invasion with the root-knot nematode M. incognita was studied. Nematode invasion was accompanied by a significant increase in the expression level of both genes; however, the accumulation of transcripts at the early stages of nematode invasion in the penetration of nematode juveniles to the roots was observed only in plants that contained the Mi-1.2 gene, which explains the resistance of tomatoes to this root-knot nematode, caused by only this gene. We reveal a change in the Mi-1 gene activity under exogenous salicylic acid treatment, which contributed to the formation of induced resistance to root-knot nematode in the susceptible plants.

Doklady Biochemistry and Biophysics. 2016;471(1):413-416
pages 413-416 views

The biodegradation of fullerene C60 by myeloperoxidase

Litasova E.V., Iljin V.V., Sokolov A.V., Vasilyev V.B., Dumpis M.A., Piotrovskiy L.B.

Abstract

It is shown for the first time that the mammalian enzymes can cause the degradation of the C60 fullerene molecules. This biodegradation is caused by the action of а hypochlorite generated neutrophil enzyme myeloperoxidase of fullerene molecule and leads to the loss of the topology of the fullerene core.

Doklady Biochemistry and Biophysics. 2016;471(1):417-420
pages 417-420 views

Ortho-phthalic acid esters in lipophilic extract from the cell culture of Aconitum baicalense Turcz ex Rapaics 1907

Semenov A.A., Enikeev A.G., Snetkova L.V., Permyakov A.V., Sokolova N.A., Dudareva L.V.

Abstract

Optically active bis-2R(–)ethylhexyl o-phthalate was obtained with 0.18% yield from dry cultured cells of Aconitum baicalense Turcz ex Rapaics 1907 by extraction with petroleum ether followed by silica gel column chromatography. Its structure was confirmed by the analysis of 13C and 1H NMR spectra. Seasonal fluctuations of quantitative phthalate content in A. baicalense cells were identified. The tests were performed under conditions excluding the presence of phthalates in reagents, materials, and laboratory dishes. The same substance was shown to be produced by cultivated cells of other plants. Biosynthesis of esters of ortho-phthalic acid by cultivated plant cells was discovered for the first time.

Doklady Biochemistry and Biophysics. 2016;471(1):421-422
pages 421-422 views

Kinetic modeling of demasking and hydrolysis of peptide bonds during proteolysis of β-lactoglobulin by trypsin

Vorob’ev M.M., Rao N.M., Kochetkov K.A.

Abstract

Proteolysis of β-lactoglobulin by trypsin was studied with fluorescence spectroscopy and an empirical exponential model was engaged to describe the peptide bond hydrolysis kinetics. The shift in the fluorescence maximum of tryptophan residues, from 342 to 352 nm, in the course of β-lactoglobulin degradation was used as an indicator of the transition of masked peptide bonds to the demasked ones, which were accessible for the enzyme action. A simple equation with only two parameters was suggested to link together the degree of demasking of peptide bonds and the degree of their hydrolysis, allowing the kinetic description of proteolysis.

Doklady Biochemistry and Biophysics. 2016;471(1):423-427
pages 423-427 views

Role of proteasomes in non-specific immune response of marine annelids

Stanovova M.V., Erokhov P.A., Gornostaev N.G., Mikhailov V.S., Lyupina Y.V.

Abstract

We investigated functioning of proteasomes and chaperones in Arenicola marina coelomocytes in conditions of lipopolysaccharide-induced inflammation. We observed the increase of chymotrypsin-like proteasome activity in coelomocytes 1 h after induction. Amount of proteasome subunits alpha- and beta-5 types increased as well. We also detected appearance of a new form of Hsp70 chaperone in infected coelomocytes. Our results allow us to consider the changes in proteasome structure and induction of chaperones as principle mechanisms in stress adaptation and defensive reactions development in annelids.

Doklady Biochemistry and Biophysics. 2016;471(1):428-430
pages 428-430 views

Platelet subpopulation bearing leukocyte specific antigen and tissue factor

Gabbasov Z.A., Saburova O.S., Antonova O.A., Golubeva N.V., Khaspekova S.G., Shustova O.N., Zyuryaev I.T., Ruda M.Y., Mazurov A.V.

Abstract

Platelets bearing leukocyte antigen CD45 were identified in the blood of patients with myocardial infarction (MI) and healthy donors by flow cytofluorimetry. Part of these platelets contained tissue factor (TF)–primary initiator of blood clotting. The number of CD45+ and CD45+/TF+ platelets in MI patients at the first day was comparable with their level in healthy donors, but was increased at 8–12 days after MI onset. At that time in some patients the amount of CD45+ and CD45+/TF+ platelets reached 5–6 and 2–3% of their total number. It is assumed that CD45+/TF+ platelets could be formed as a result of platelet interaction with leukocytes or leukocyte produced membrane microparticles.

Doklady Biochemistry and Biophysics. 2016;471(1):431-434
pages 431-434 views

Quantum-classical model of retinal photoisomerization reaction in visual pigment rhodopsin

Lakhno V.D., Shigaev A.S., Feldman T.B., Nadtochenko V.A., Ostrovsky M.A.

Abstract

A quantum-classical model of photoisomerization of the visual pigment rhodopsin chromophore is proposed. At certain (and more realistic) parameter value combinations, the model is shown to accurately reproduce a number of independent experimental data on the photoreaction dynamics: the quantum yield, the time to reach the point of conical intersection of potential energy surfaces, the termination time of the evolution of quantum subsystem, as well as the characteristic low frequencies of retinal molecular lattice fluctuations during photoisomerization. In addition, the model behavior is in good accordance with experimental data about coherence and local character of quantum transition.

Doklady Biochemistry and Biophysics. 2016;471(1):435-439
pages 435-439 views

Comparative characteristics of two anion-channel rhodopsins and prospects of their use in optogenetics

Dolgikh D.A., Malyshev A.Y., Roshchin M.V., Smirnova G.R., Nekrasova O.V., Petrovskaya L.E., Feldman T.B., Balaban P.M., Kirpichnikov M.P., Ostrovsky M.A.

Abstract

Anion-selective opsins slow ChloC and ACR2 were expressed in rat brain cortical neurons by electroporation in utero. It is shown that the light-activated channel ACR2 has pronounced advantages in terms of both the inactivation kinetics and the neuron inhibition intensity, which is associated with a more negative value of the light-activated current reversal potential compared to the slow ChloC channel. The identified properties of opsin ACR2 indicate that it can be used for strictly controlled suppression of neuronal activity in optogenetic experiments, including the expression in the retinal ganglionic cells for reconstituting the OFF-component of their receptive field, which is essential for optogenetic prosthetics of degenerative retina.

Doklady Biochemistry and Biophysics. 2016;471(1):440-442
pages 440-442 views

The reasons of Trithorax-like expression disturbance in Trl3609 allele of Drosophila melanogaster

Karagodin D.A., Battulina N.V., Merkulova T.I., Baricheva E.M.

Abstract

The regulatory region of the Trl gene was analyzed using the mutation Trl3609, resulting from the insertion of the P-element into the promoter region of the gene as well as mutations obtained on its basis. It is shown that two last transcription start sites, which are most often used in vitro in S2 cells, are almost not used in vivo. Experimental data indicate that transcription terminators in transposons play an important role in the decrease in the transcription level of the recipient gene.

Doklady Biochemistry and Biophysics. 2016;471(1):443-446
pages 443-446 views

Electrical discharges in Chinese salamander Andrias davidianus

Olshanskii V.M., Baron V.D., Wei X.

Abstract

In 2-year-old Chinese giant salamanders Andrias davidianus, occasional electric discharges with a characteristic pattern similar to the electric discharges of weakly electric catfish, Polypterus and Protopterus, were recorded for the first time. The discharges markedly differ in shape from the myograms accompanying abrupt movements of the salamander or exceeded them in amplitude by more than an order of magnitude. The discharges were recorded both in the autonomous experiment in the absence of experimenters and at a weak tactile stimulation.

Doklady Biochemistry and Biophysics. 2016;471(1):447-449
pages 447-449 views

Development and investigation of recombinant immunotoxin protein 4D5scFv-mCherry-PE(40)

Shilova O.N., Souslova E.A., Pilunov A.M., Deyev S.M., Petrov R.V.

Abstract

Development of agents for theranostics implies combining the targeting module, the effector module, and the detection module within the same complex or recombinant protein. We have constructed, isolated, and characterized the 4D5scFv-mCherry-PE(40) protein, which exhibits fluorescent properties and specifically binds to cancer cells expressing the HER2 receptor and reduces their viability. The ability of the obtained targeted antitumor agent 4D5scFv-mCherry-PE(40) to selectively stain the HER2-positive cells and its highly selective cytotoxicity against these cells make the obtained targeted recombinant protein 4D5scFv-mCherry-PE(40) a promising theranostic agent for the diagnostics and therapy of HER2-positive human tumors.

Doklady Biochemistry and Biophysics. 2016;471(1):450-453
pages 450-453 views