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Vol 479, No 1 (2018)

Biochemistry, Biophysics, and Molecular Biology

The Status of the Hemostasis System under the Influence of Proline Peptides during the Development of Experimental Metabolic Syndrome

Grigorjeva M.E., Myasoedov N.F., Lyapina L.A., Obergan T.Y., Andreeva L.A.

Abstract

A comparative study of the influence of regulatory proline peptides Pro–Gly–Pro, Pro–Arg–Pro, Pro–Gly–Pro–Leu, and Arg–Pro–Gly–Pro on the state of the hemostasis system was carried out in an experiment on male rats with metabolic syndrome. Under these conditions, repeated (7-fold) intranasal administration of the peptides in a daily dose of 50 μg/kg resulted in an increase in the anticoagulant potential of the blood, namely, in an increase in the anticoagulant, fibrinolytic, and antiplatelet activity 20 h and 7 days after the last peptide injection. The arginine–containing peptide Arg–Pro–Gly–Pro had the most pronounced and stable effect on haemostasis under these experimental conditions.

Doklady Biochemistry and Biophysics. 2018;479(1):59-61
pages 59-61 views

MNT Optimization for Intracellular Delivery of Antibody Fragments

Ulasov A.V., Khramtsov Y.V., Lupanova T.N., Tsvetkova A.D., Rosenkranz A.A., Slastnikova T.A., Georgiev G.P., Sobolev A.S.

Abstract

We studied the possibility of optimizing modular nanotransporters (MNTs) for the intracellular delivery of antibody fragments into the nuclei of cells of a specified type. Basic MNT with a reduced size retaining the desired functions was obtained, and the principal possibility of obtaining an MNT carrying an antibody fragment by microbiological synthesis was shown.

Doklady Biochemistry and Biophysics. 2018;479(1):62-65
pages 62-65 views

Stability of Chromatin Remodeling Complex Subunits Is Determined by Their Phosphorylation Status

Azieva A.M., Sheinov A.A., Galkin F.A., Georgieva S.G., Soshnikova N.V.

Abstract

It was found that, in the differentiated cells of mouse brain, the level of core (Brg1 and BAF155) and specific (BRD7, BAF180, and PHF10) subunits of the chromatin-remodeling complex PBAF is reduced compared to the undifferentiated proliferating cells. Phosphorylation of PBAF complex subunits is required for maintaining their stability in differentiated brain cells.

Doklady Biochemistry and Biophysics. 2018;479(1):66-68
pages 66-68 views

The Differential Expression of Adhesion Molecule and Extracellular Matrix Genes in Mesenchymal Stromal Cells after Interaction with Cord Blood Hematopoietic Progenitors

Buravkova L.B., Andreeva E.R., Lobanova M.V., Cotnezova E.V., Grigoriev A.I.

Abstract

The dynamics of the expression of genes encoding adhesion molecules, molecules of the connective tissue matrix, and its remodeling enzymes was studied in multipotent mesenchymal stromal cells (MSCs) from human adipose tissue after interaction with cord blood hematopoietic progenitors (HSPCs). An upregulation of ICAM1 and VCAM1, directly proportional to the coculture time (24–72 h), was found. After 72 h of culturing, a downregulation of the genes encoding the majority of matrix molecules (SPP1; COL6A2,7A1; MMP1,3; TIMP1,3; and HAS1) and cell-matrix adhesion molecules (ITGs) was revealed. The detected changes may ensure the realization of the stromal MSC function due to improvement of adhesion and transmigration of HSPCs into the subcellular space.

Doklady Biochemistry and Biophysics. 2018;479(1):69-71
pages 69-71 views

The Influence of Myofibrils on the Proliferation and Differentiation of Myoblasts Cocultured with Macrophages

Kravchenko I.V., Furalev V.A., Popov V.O.

Abstract

We studied the effect of myofibrils on proliferation and differentiation of myoblasts cocultured with macrophages as well as the effect of incubation of macrophages with myofibrils on the expression by macrophages of the compounds that are cytokines for muscle cells. In the cocultures, macrophages stimulated the proliferation of myoblasts. Myofibrils greatly enhanced the stimulating effect of macrophages, whereas lipopolysaccharide (LPS) completely abolished it. The culture medium conditioned by macrophages activated the proliferation of myoblasts that were incubated with myofibrils but inhibited it when myoblasts were incubated with LPS. Possibly, myofibrils and their constituent proteins activate macrophages in an alternative pathway, enriching the population with M2-type macrophages.Z

Doklady Biochemistry and Biophysics. 2018;479(1):72-76
pages 72-76 views

The Role of Epibionts of Bacteria of the Genus Pseudoalteromonas and Cellular Proteasomes in the Adaptive Plasticity of Marine Cold-Water Sponges

Kravchuk O.I., Lavrov A.I., Finoshin A.D., Gornostaev N.G., Georgiev A.A., Abaturova S.B., Mikhailov V.S., Lyupina Y.V.

Abstract

It was found that cells of different color morphs of the cold-water marine sponges Halichondria panicea (Pallas, 1766) of the class Demospongiae differ in the content of epibionts of bacteria of the genus Pseudoalteromonas. The sponge cells with elevated levels of epibionts of bacteria of the genus Pseudoalteromonas showed an increased expression of Hsp70 proteins but had a reduced level of the proteasomal catalytic beta 5 subunit, which was accompanied by a change in their activity. Probably, epibionts of bacteria of the genus Pseudoalteromonas may affect the ubiquitin–proteasome system in the cells of cold-water marine sponges and, thereby, ensure their adaptive plasticity.

Doklady Biochemistry and Biophysics. 2018;479(1):77-79
pages 77-79 views

Insulator Protein Su(Hw) Is Indispensable for Amplification of Part of Drosophila Amplicons in Follicular Cells (DAFCs) during Early Oogenesis

Krasnov A.N., Vorobyova N.E., Mazina M.Y.

Abstract

We found that the Su(Hw) insulator protein binds to all known Drosophila amplicons in follicular cells (DAFCs). Su(Hw) binding is required for ORC replication complex positioning on part of DAFCs during early oogenesis. Our data allow us to expand the current view on the role of the Su(Hw) protein in Drosophila oogenesis as a transcription repressor. We assume that Su(Hw) is involved in the coordination of transcription and replication processes during oogenesis in Drosophila.

Doklady Biochemistry and Biophysics. 2018;479(1):80-82
pages 80-82 views

Dopamine Synthesis as a Mechanism of Brain Plasticity in Nigrostriatal System Pathology

Kolacheva A.A., Ugrumov M.V.

Abstract

Using an experimental Parkinson’s disease model (symptoms develop in mice after the injection of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine), we studied the characteristics of the synthesis of dopamine as a possible compensatory mechanism aimed at maintaining the dopamine level in the dopaminergic neurons that survived in this pathology. We found no correlation between the content and activity of tyrosine hydroxylase in the nigrostriatal system. The enzyme activity and the dopamine content showed unidirectional changes in the substantia nigra, but not in the striatum, which is apparently due to triggering other compensatory mechanisms.

Doklady Biochemistry and Biophysics. 2018;479(1):83-86
pages 83-86 views

Alternative Splicing of the Xmas mRNA Encoding the mRNA Export Protein in Drosophila melanogaster

Kopytova D.V., Il’in Y.V., Nabirochkina E.N.

Abstract

It is shown that Drosophila melanogaster has Xmas mRNA whose alternative splicing leads to the formation of three transcripts: Xmas, Xmas-2, and Xmas-1. As a result, three proteins are synthesized: Xmas, Xmas-2, and, presumably, Xmas-1. The size of the Xmas protein is close to the size of its homologue in humans. Adult flies contain large amounts of this protein, whereas in embryos it is absent.

Doklady Biochemistry and Biophysics. 2018;479(1):87-89
pages 87-89 views

Guide RNA Design for CRISPR/Cas9-Mediated Potato Genome Editing

Khromov A.V., Gushchin V.A., Timerbaev V.I., Kalinina N.O., Taliansky M.E., Makarov V.V.

Abstract

The activity of the pool of sgRNA molecules designed for different regions of potato coilin and phytoene desaturase genes was compared in vitro. Due to the presence of nucleotides unpaired with DNA, sgRNA is able not only to inhibit but also to stimulate the activity of the Cas9–sgRNA complex in vitro. Although the first six nucleotides located in the DNA substrate proximally to the PAM site at the 3' end are the binding sites for cas9, they had no significant effect on the activity of the Cas9–sgRNA complex.

Doklady Biochemistry and Biophysics. 2018;479(1):90-94
pages 90-94 views

Modular Nanotransporter with P21 Fragment Inhibits DNA Repair after Bleomycin Treatment

Kamaletdinova T.R., Rosenkranz A.A., Ulasov A.V., Khramtsov Y.V., Tsvetkova A.D., Georgiev G.P., Sobolev A.S.

Abstract

Modular nanotransporter (MNT) with C-terminal fragment of the p21 protein was synthesized and characterized, and its effect on DNA lesions was studied. This p21 fragment in MNT can significantly inhibit DNA repair in A431 human carcinoma cells after bleomycin treatment.

Doklady Biochemistry and Biophysics. 2018;479(1):95-97
pages 95-97 views

Stabilization of Butyrylcholinesterase by the Entrapment into the Natural Polymer-Based Gels

Lonshakova-Mukina V.I., Esimbekova E.N., Kratasyuk V.A.

Abstract

A new method for obtaining stable butyrylcholinesterase (BuChE) samples based on the enzyme immobilization in starch and gelatin gels followed by drying is proposed. Coimmobilization of BuChE with the thiol group indicator 5,5'-dithiobis(2-nitrobenzoic) acid did not reduce the activity of BuChE, which allowed us to simplify the procedure and reduce the time of analysis of organophosphorus pesticides. The resulting immobilized samples retained activity for at least 300 days. BuChE samples based on the starch gel showed a greater sensitivity in the determination of pesticides as compared to the samples based on the gelatin gel.

Doklady Biochemistry and Biophysics. 2018;479(1):98-100
pages 98-100 views

MicroRNA-Dependent Regulation of IGF1R Gene Expression in Hormone-Sensitive and Hormone-Resistant Prostate Cancer Cells

Tarasov V.A., Tyutyakina M.G., Makhotkin M.A., Shin E.F., Naboka A.V., Mashkarina A.N., Chebotarev D.A., Cherkasova E.N., Kogan M.I., Chibichyan M.B., Matishov D.G.

Abstract

Using multiple parallel sequencing on Illumina platform, we identified eight microRNAs that showed significant opposite changes of gene expression in cells of the hormone-sensitive LNCaP prostate cancer cell line and in cells of the hormone-resistant DU-145 cell line, in comparison to the microRNA expression in the normal prostate tissue cells. We found that the insulin-like growth factor 1 receptor (IGF1R) gene is a target of five microRNAs whose expression is increased in LNCaP cells and reduced in DU-145 cells.

Doklady Biochemistry and Biophysics. 2018;479(1):101-104
pages 101-104 views

The Gene Encoding the Universal Stress Protein AtUSP is Regulated by Phytohormones and Involved in Seed Germination of Arabidopsis thaliana

Gorshkova D.S., Getman I.A., Voronkov A.S., Chizhova S.I., Kuznetsov V.V., Pojidaeva E.S.

Abstract

For the first time, the organ-specific expression pattern of the AtUSP (At3g58450) gene, which also undergoes hormonal regulation, was shown. The USP protein encoded by this gene is involved in seed germination of Arabidopsis thaliana and, unlike abscisic acid, stimulates this process.

Doklady Biochemistry and Biophysics. 2018;479(1):105-107
pages 105-107 views

Translocation of Oligonucleotide–Oligosaccharide Complexes into Cells of the Brain

Dygalo N.N., Kalinina T.S., Lanshakov D.A.

Abstract

Irradiation of a mixture of oligonucleotides with dextran resulted in the formation of a complex that is detected by a decelerated migration of an irradiated sample in electrophoretic gel compared to a non-irradiated one. When injected into the brain of neonatal rats, the formed complex penetrated into the cells 3 times easier compared to the original oligonucleotide, thus indicating that the use of radiation crosslinking of oligonucleotides with oligosaccharides is promising to enhance the efficiency of delivery of gene-targeted oligonucleotide drugs into cells.

Doklady Biochemistry and Biophysics. 2018;479(1):108-110
pages 108-110 views

Magnetosensitivity of E. coli Bacteria in the Presence of Zinc Isotopes

Letuta U.G., Shailina D.M.

Abstract

The combined effect of the zinc magnetic isotope 67Zn and weak magnetic field 25–35 mT causes a 2–4-fold increase in the colony-forming ability of bacteria E. coli in comparison with the nonmagnetic isotopes 64, 66Zn. The effects of magnetic field in the range of 2.2–8 mT were detected for all bacteria regardless of the zinc-isotope enrichment of the media. This indicates the sensitivity of intracellular processes to weak magnetic fields. An increase in the ATP concentration in E. coli cells was only detected for the bacteria grown on the medium with the magnetic zinc isotope in the range of 2.2–4.2 mT. The obtained data confirm the existence of stages of intracellular enzymatic processes that are sensitive to magnetic fields and magnetic moments of atomic nuclei.

Doklady Biochemistry and Biophysics. 2018;479(1):111-113
pages 111-113 views

Border Structure of Intercalary Heterochromatin Bands of Drosophila melanogaster Polytene Chromosomes

Khoroshko V.A., Zykova T.Y., Popova O.O., Zhimulev I.F.

Abstract

The precise genomic localization of the borders of 62 intercalary heterochromatin bands in Drosophila polytene chromosomes was determined. A new type of bands containing chromatin of different states was identified. This type is a combination of the gray band and the intercalary heterochromatin band, creating a genetic structure that with a light microscope is identified as a continuous band. The border structure of such bands includes the coding regions of genes with ubiquitous activity.

Doklady Biochemistry and Biophysics. 2018;479(1):114-117
pages 114-117 views

Preparation and Properties of Nanoparticles, tRNA–Bivalent Metal Cation (Me2+) Complexes, and Prospects of Their Practical Use

Danilevich V.N., Sorokin V.V., Moiseev Y.P., Sizova S.V.

Abstract

The patterns of formation of RNA nanoparticles (NPs) during thermal cycling of bacterial total tRNA in the presence of cations Ca2+, Mn2+, Ni2+, Zn2+, Co2+, and Cu2+ were studied. The optimal conditions for the production of NPs were found, and it was revealed that their size depends on the ratio of the concentrations of Me2+ and tRNA. The concentration of reagents for obtaining NPs of small size (from 5 to 100 nm) was selected. It was shown that tRNA-based nanoparticles can comprise short (20–50 nt) ribooligonucleotides, including aptamers and siRNAs. The stability of NPs during storage in buffer solutions of various composition was studied. It was found that the initial suspensions of NPs are quite stable, but they are rapidly destroyed in PBS buffer (pH 7.4). A simple and effective stabilizer (polyarginine) was found, the additives of which ensure the preservation of nanoparticles in PBS buffer for more than 5 h. Nanoparticles modified with the stabilizer are resistant to blood serum nucleases and can be used for transfection.

Doklady Biochemistry and Biophysics. 2018;479(1):118-122
pages 118-122 views

General Sources of Dopamine As a Potential Morphogenic Factor in the Developing Striatum of Rats

Kurtova A.I., Dil’mukhametova L.K., Mingazov E.R., Ugrumov M.V.

Abstract

In the striatum of rats at different stages of development, we determined the content of tyrosine hydroxylase and aromatic L-amino acids decarboxylase using double immunohistochemical labeling and estimated the expression level of their transcripts by real-time PCR. We found that, in different periods of development, there are three sources of dopamine in the striatum of rats: bienzymatic nerve fibers (throughout ontogeny), bienzymatic neurons (appear on day 18 of embryonic development), and monoenzymatic neurons (in adult animals). Dopamine, which is synthesized in the striatal neurons in the prenatal period, may function as a morphogenetic factor.

Doklady Biochemistry and Biophysics. 2018;479(1):123-126
pages 123-126 views

The First Recombinant Viper Three-Finger Toxins: Inhibition of Muscle and Neuronal Nicotinic Acetylcholine Receptors

Makarova Y.V., Kryukova E.V., Shelukhina I.V., Lebedev D.S., Andreeva T.V., Ryazantsev D.Y., Balandin S.V., Ovchinnikova T.V., Tsetlin V.I., Utkin Y.N.

Abstract

Genes encoding two three-finger toxins TFT-AF and TFT-VN, nucleotide sequences of which were earlier determined by cloning cDNA from venom glands of vipers Azemiops feae and Vipera nikolskii, respectively, were expressed for the first time in E. coli cells. The biological activity of these toxins was studied by electrophysiological techniques, calcium imaging, and radioligand analysis. It was shown for the first time that viper three-finger toxins are antagonists of nicotinic acetylcholine receptors of neuronal and muscle type.

Doklady Biochemistry and Biophysics. 2018;479(1):127-130
pages 127-130 views