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Vol 467, No 1 (2016)

Biochemistry, Biophysics and Molecular Biology

N-acyl dopamines induce cell death in PC12 cell line via induction of nitric oxide generation and oxidative stress

Ashba A.M., Akimov M.G., Gretskaya N.M., Bezuglov V.V.

Abstract

It was shown that dopamine amides of arachidonic, oleic, and docosahexaenoic acids exhibit toxicity with respect to PC12 pheochromocytoma cell line. The mechanism of realization of the cytotoxic effect of acyl dopamines is the induction of oxidative stress. This event is preceded by triggering the synthesis of nitric oxide.

Doklady Biochemistry and Biophysics. 2016;467(1):81-84
pages 81-84 views

Advanced lymphoblastic clones detection in T-cell leukemia

Minervina A.A., Komkov A.Y., Mamedov I.Z., Lebedev Y.B.

Abstract

T cell acute lymphoblastic leukemia (T-ALL) is an aggressive malignant neoplasm of the lymphocyte precursors that suffered malignant transformation arresting the lymphoid cell differentiation. Clinical studies revealed monoor, more rarely, oligoclonal nature of the disease. A precise identification of malignant clone markers is both the crucial stage of early diagnostics and the essential prognostic factor for therapeutic treatment. Here we present an improved system for unbiased detection of lymphoblastic clones in bone marrow aspirates of T-ALL patients. The system based on multiplex PCR of rearranged T-cell receptor locus (TRB) and straightforward sequencing of the resulted PCR fragments. Testing of the system on genomic DNA from Jurkat cell line and four clinical bone marrow aspirates revealed a set of unique TRB rearrangements that precisely characterize each of tested samples. Therefore, the outcome of the system produces highly informative molecular genetic markers for further monitoring of minimal residual disease in T-ALL patients.

Doklady Biochemistry and Biophysics. 2016;467(1):85-88
pages 85-88 views

New family of pectinase genes PGU1b–PGU3b of the pectinolytic yeast Saccharomyces bayanus var. uvarum

Naumov G.I., Shalamitskiy M.Y., Naumova E.S.

Abstract

Using yeast genome databases and literature data, we have conducted a phylogenetic analysis of pectinase PGU genes from Saccharomyces strains assigned to the biological species S. arboricola, S. bayanus (var. uvarum), S. cariocanus, S. cerevisiae, S. kudriavzevii, S. mikatae, S. paradoxus, and hybrid taxon S. pastorianus (syn. S. carlsbergensis). Single PGU genes were observed in all Saccharomyces species, except S. bayanus. The superfamily of divergent PGU genes has been documented in S. bayanus var. uvarum for the first time. Chromosomal localization of new PGU1b, PGU2b, and PGU3b genes in the yeast S. bayanus var. uvarum has been determined by molecular karyotyping and Southern hybridization.

Doklady Biochemistry and Biophysics. 2016;467(1):89-91
pages 89-91 views

Antitumor effect of arabinogalactan and platinum complex

Starkov A.K., Zamay T.N., Savchenko A.A., Ingevatkin E.V., Titova N.M., Kolovskaya O.S., Luzan N.A., Silkin P.P., Kuznetsova S.A.

Abstract

The article presents the results of investigation of antitumor properties of platinum–arabinogalactan complex. We showed the ability of the complex to inhibit the growth of Ehrlich ascites tumor cells. It is found that the distribution of the platinum–arabinogalactan complex is not specific only for tumor cells in mice. The complex was found in all tissues and organs examined (ascites cells, embryonic cells, kidney, and liver). The mechanism of action of the arabinogalactan–platinum complex may be similar to cisplatin as the complex is able to accumulate in tumor cells.

Doklady Biochemistry and Biophysics. 2016;467(1):92-94
pages 92-94 views

The functional activity of hypothalamic signaling systems in rats with neonatal diabetes mellitus treated with metformin

Derkach K.V., Sukhov I.B., Kuznetsova L.A., Buzanakov D.M., Shpakov A.O.

Abstract

The effect of the two-month metformin treatment (200 mg/kg/day) of rats with the neonatal model of type 2 diabetes mellitus on the functional activity of hypothalamic signaling systems was studied. It was shown that metformin treatment restored the sensitivity of hypothalamic adenylyl cyclase signaling system to agonists of the type 4 melanocortin receptor and the type 2 dopamine receptor but did not influence significantly the functions of the insulin signaling system. These data suggest new targets and mechanisms of metformin action in the CNS, which may mediate its restoring effect on energy homeostasis impaired in diabetic pathology.

Doklady Biochemistry and Biophysics. 2016;467(1):95-98
pages 95-98 views

Change in the selection of microRNA strands during DNA damage induction

Tarasov V.A., Makhotkin M.A., Shin E.F., Boiko N.V., Tyutyakina M.G., Chikunov I.E., Naboka A.V., Mashkarina A.N., Kirpii A.A., Matishov D.G.

Abstract

It was first shown that DNA damage induction in mitomycin C-treated HeLa cells leads to a change in the selection of 5p and 3p microRNA duplex strands in the formation of the RNA-induced silencing complex (RISC).

Doklady Biochemistry and Biophysics. 2016;467(1):99-101
pages 99-101 views

The inhibitors of Arp2/3 complex and WASP proteins modulate the effect of glutoxim on Na+ transport in frog skin

Krutetskaya Z.I., Melnitskaya A.V., Antonov V.G., Nozdrachev A.D.

Abstract

Using voltage-clamp technique, the involvement of WASP proteins and Arp2/3 complex in the effect of immunomodulator drug glutoxim on Na+ transport in frog skin was investigated. It was shown for the first time that preincubation of the skin with the N-WASP inhibitor wiskostatin or the Arp2/3 complex inhibitor CK-0944666 significantly decreases the stimulatory effect of glutoxim on Na+ transport. The data suggest the involvement of actin filament polymerization and branching in the glutoxim effect on Na+ transport in frog skin.

Doklady Biochemistry and Biophysics. 2016;467(1):102-104
pages 102-104 views

Temperature dependence of protein fluorescence in Rb. sphaeroides reaction centers frozen to 80 K in the dark or on the actinic light as the indicator of protein conformational dynamics

Knox P.P., Korvatovsky B.N., Krasilnikov P.M., Paschenko V.Z., Seifullina N.H., Grishanova N.P., Rubin A.B.

Abstract

The differences in the average fluorescence lifetime (τav) of tryptophanyls in photosynthetic reaction center (RC) of the purple bacteria Rb. sphaeroides frozen to 80 K in the dark or on the actinic light was found. This difference disappeared during subsequent heating at the temperatures above 250 K. The computer-based calculation of vibration spectra of the tryptophan molecule was performed. As a result, the normal vibrational modes associated with deformational vibrations of the aromatic ring of the tryptophan molecule were found. These deformational vibrations may be active during the nonradiative transition of the molecule from the excited to the ground state. We assume that the differences in τav may be associated with the change in the activity of these vibration modes due to local variations in the microenvironment of tryptophanyls during the light activation.

Doklady Biochemistry and Biophysics. 2016;467(1):105-109
pages 105-109 views

Peroxiredoxin 6 is a natural radioprotector

Sharapov M.G., Gudkov S.V., Gordeeva A.E., Karp O.E., Ivanov V.E., Shelkovskaya O.V., Bruskov V.I., Novoselov V.I., Fesenko E.E.

Abstract

After injection of 20 mg/kg peroxiredoxin 6 to male Kv:SHK mice 15 min before X-ray irradiation in the range of lethal doses (7–10 Gy), the mice remained alive for 30 days, whereas the mortality of the control animals was 100%. In the irradiated animals, peroxiredoxin 6 decreased the severity of radiation-induced leucopenia, granulocytopenia, and thrombocytopenia, increased the number of blood corpuscles, and prevented the mass death of epithelial cells and the destruction of the small intestine. Thus, peroxiredoxin 6 can be regarded as a prophylactic radioprotective agent.

Doklady Biochemistry and Biophysics. 2016;467(1):110-112
pages 110-112 views

EPR spectroscopy solutions for assessment of decellularization of intrathoracic organs and tissues

Gubareva E.A., Kuevda E.V., Dzhimak S.S., Basov A.A., Sotnichenko A.S., Bolotin S.N., Gilevich I.V., Gumenyuk I.S., Macchiarini P.

Abstract

Using EPR spectroscopy it was established that the determination of the concentration of paramagnetic centers in lyophilized tissues allows indirect evaluation of the quality of decellularization of intrathoracic organs (diaphragm, heart, and lungs), since the content of paramagnetic particles in them can serve as a criterion of cell viability and points to the necessity to repeat decellularization. Experiments in rats showed that the EPR spectra of the native thoracic organs contained paramagnetic centers with g-factor values ranging from 2.007 to 2.011 at a concentration of 10–8 to 6.62 × 10–7 mol/g of lyophilized tissue, whereas in all decellularized tissues of the same organs paramagnetic particles were not detected.

Doklady Biochemistry and Biophysics. 2016;467(1):113-116
pages 113-116 views

New monoclonal antibodies to the Ebola virus glycoprotein: Identification and analysis of the amino acid sequence of the variable domains

Panina A.A., Aliev T.K., Shemchukova O.B., Dement’yeva I.G., Varlamov N.E., Pozdnyakova L.P., Bokov M.N., Dolgikh D.A., Sveshnikov P.G., Kirpichnikov M.P.

Abstract

We determined the nucleotide and amino acid sequences of variable domains of three new monoclonal antibodies to the glycoprotein of Ebola virus capsid. The framework and hypervariable regions of immunoglobulin heavy and light chains were identified. The primary structures were confirmed using massspectrometry analysis. Immunoglobulin database search showed the uniqueness of the sequences obtained.

Doklady Biochemistry and Biophysics. 2016;467(1):117-120
pages 117-120 views

Transcription factor Oct-1 stimulates the release of Mts1/S100A4 protein by the cancer cells

Portseva T.N., Brechalov A.V., Dukhanina E.A., Stepchenko A.G., Pankratova E.V., Georgieva S.G.

Abstract

The effect of the transcription factor Oct-1 (POU2F1) on the expression of the tumor cell marker metastasin (Mts1/S100A4) was studied. Comparative analysis of various tumor lines showed no clear correlation between the expression level of Mts1/S100A4 and the content of Oct-1. However, at stable transfection of tumor cells with Oct-1A, Oct-1L, and Oct-1X isoforms we detected an elevated level of Oct-1, which stimulated Mts1/S100A4 secretion. These findings extend our understanding of the molecular mechanisms of the tumorigenic effect of Oct-1.

Doklady Biochemistry and Biophysics. 2016;467(1):121-123
pages 121-123 views

Pleiotropic effect of thyroid hormones on gene expression in fish as exemplified from the blue bream Ballerus ballerus (Cyprinidae): Results of transcriptomic analysis

Rastorguev S.M., Nedoluzhko A.V., Levina M.A., Prokhorchuk E.B., Skryabin K.G., Levin B.A.

Abstract

A pronounced pleiotropic effect of thyroid hormones on the regulation of gene expression in fish in postembryogenesis was demonstrated for the first time using larvae and juveniles of the blue bream Ballerus ballerus as an example. Genome-wide transcriptome sequencing (RNA-seq) identified 1212 differentially expressed genes in the brain and liver of fish kept in triiodothyronine solution (0.25 ng/mL). Our data show that the regulation of gene expression by thyroid hormones is widespread in nature: it involves not only the structural genes but also the regulatory genes. A significant number of genes under the control of thyroid hormones are involved in the determination of morphological traits.

Doklady Biochemistry and Biophysics. 2016;467(1):124-127
pages 124-127 views

The oxidative modification of cellular fibrin-stabilizing factor

Rosenfeld M.A., Shchegolikhin A.N., Leonova V.B., Kostanova E.A., Biryukova M.I., Bychkova A.V., Konstantinova M.L., Vasilyeva A.D.

Abstract

For the first time, the induced oxidative modification of cellular fibrin-stabilizing factor (cFXIII) has been studied. According to the electrophoresis analysis, the conversion of oxidized cFXIII into FXIIIa resulted in producing the enzyme that significantly lost the initial enzymatic activity. At the same time, FXIIIa subjected to induced oxidation was completely devoid of enzymatic activity. The results of FTIR spectroscopy showed that the oxidation of cFXIII or FXIIIa was accompanied by profound changes both in chemical and spatial structures of the protein. The results of this study are in good agreement with our earlier assumption regarding the antioxidant role of the regulatory subunits B of plasma fibrin-stabilizing factor.

Doklady Biochemistry and Biophysics. 2016;467(1):128-131
pages 128-131 views

Mechanism of caspase-2 activation upon DNA damage

Aksenova V.I., Kopeina G.S., Zamaraev A.V., Zhivotovsky B.D., Lavrik I.N.

Abstract

The mechanism of caspase-2 activation in response to DNA damage was studied using human ovarian cancer cells Caov-4 treated with chemotherapeutic agent cisplatin. It was shown that mutations of the three cleavage sites of caspase-2 do not affect the assembly of the macromolecular complex of caspase-2 and its activation, but, conversely, stabilize this complex, most likely, via the inhibition of the dissociation of the active caspase-2.

Doklady Biochemistry and Biophysics. 2016;467(1):132-135
pages 132-135 views

Impact of tightly focused femtosecond laser pulses on nucleolus-like bodies of mouse GV oocyte and the ability of mouse oocytes to mature

Astafev A.A., Zalesskiy A.D., Zatsepina O.V., Kostrov A.N., Krivoharchenko A.S., Osychenko A.A., Serobyan G.A., Nadtochenko V.A.

Abstract

Using femtosecond laser radiation, nucleolus-like bodies (NLBs) of mouse oocytes were locally dissected without damage to zona pellucida, cytoplasmic membrane, nuclear membrane, and nucleoplasm surrounding NLB. It was found that, after dissection of 2.7 × 10–11 cm3 of NLB material, which is approximately 5.2% of 10 μm NLB volume, the probability of germinal vesicle oocyte development to metaphase II stage of meiosis decreased 3–7 times compared to the non-treated oocytes. This result indicates that NLB material organization is significant for mouse oocyte maturation.

Doklady Biochemistry and Biophysics. 2016;467(1):136-140
pages 136-140 views

Investigation of the effect of α-melanocyte-stimulating hormone on proliferation and early stages of differentiation of human induced pluripotent stem cells

Novosadova E.V., Manuilova E.S., Arsenyeva E.L., Andreeva L.A., Lebedeva O.S., Grivennikov I.A., Myasoedov N.F.

Abstract

We have studied the influence of α-melanocyte-stimulating hormone (α-MSH) on proliferation and early stages of differentiation of human induced pluripotent stem cells (iPSc). We have demonstrated that α-MSH receptor genes are expressed in undifferentiated iPSc. The expression levels of MCR1, MCR2, and MCR3 increased at the embryoid body (EB) formation stage. The formation of neural progenitors was accompanied by elevation of MCR2, MCR3, and MCR4 expression. α-MSH had no effect on EB generation and iPSc proliferation at concentrations ranging from 1 nM to 10 μM. At the same time, α-MSH increased the generation of neural rosettes in human iPSc cultures more than twice.

Doklady Biochemistry and Biophysics. 2016;467(1):141-144
pages 141-144 views

Transcriptional control of insulin-sensitive glucose carrier Glut4 expression in adipose tissue cells

Penkov D.N., Akopyan Z.A., Kochegura T.N., Egorov A.D.

Abstract

In search for new targets for obesity treatment, we have studied the effect of several transcription factors on the conversion of murine preadipocytes from the 3T3-L1 cell line into adipocytes. We have found that knockdown of Prep1 gene expression affects adipogenic differentiation and results in significant increase in the insulin-sensitive glucose carrier Glut4 gene expression.

Doklady Biochemistry and Biophysics. 2016;467(1):145-149
pages 145-149 views

Hypoxia as pathogenic factor affecting the eye tissues: The selective apoptotic damage of the conjunctiva and anterior epithelium of the cornea

Akberova S.I., Markitantova Y.V., Ryabtseva A.A., Stroeva O.G.

Abstract

The effect of acute hypoxia on the occurrence of apoptosis in eye cells in rats placed in a pressure chamber was studied. Selective primary lesion of cells of the conjunctiva and the anterior corneal epithelium was found. A possible role of the simulated hypoxic conditions in the dry eye syndrome pathogenesis, which is accompanied by primary lesion of cells in the anterior eye surface tissues is discussed.

Doklady Biochemistry and Biophysics. 2016;467(1):150-152
pages 150-152 views

Secretory activity of the brain and peripheral organs: Spontaneous and stimulated release of noradrenaline in the ontogenesis of rats

Bondarenko N.S., Murtazina A.R., Dil’mukhametova L.K., Ikonopistseva M.A., Volina E.V., Ugrumov M.V.

Abstract

Spontaneous and K+-stimulated release of noradrenaline from the hypothalamus, adrenal gland, and organ of Zuckerkandl under their flowing incubation was investigated in the perinatal period of ontogenesis of rats. The results suggest that, during the investigated period of ontogenesis, adrenal glands are the main source of noradrenaline in the blood, whereas the contributions of the organ of Zuckerkandl and the brain are not as significant and change during this period.

Doklady Biochemistry and Biophysics. 2016;467(1):153-156
pages 153-156 views

Expression and purification of an engineered human endothelin receptor B in a monomeric form

Mishin A.V., Luginina A.P., Potapenko A.P., Borshchevskiy V.I., Katritch V., Edelweiss E., Okhrimenko I.S., Gordeliy V.I., Cherezov V.G.

Abstract

In humans, two endothelin receptors, ETa and ETb, are activated by three endogenous 21-mer cyclic peptides, ET-1, ET-2, and ET-3, which control various physiological processes, including vasoconstriction, vasodilation, and stimulation of cell proliferation. The first stage of this study it to produce a stable solubilized and purified receptor in a monodisperse state. This article is focused on the engineering, expression, purification, and characterization of the endothelin receptor B for subsequent structural and functional studies.

Doklady Biochemistry and Biophysics. 2016;467(1):157-161
pages 157-161 views

The level of the Phf10 protein, a PBAF chromatin-remodeling complex subunit, correlates with the Mts1/S100A4 expression in human cancer cell lines

Soshnikova N.V., Simonov Y.P., Brechalov A.V., Portseva T.N., Pankratova E.V., Georgieva S.G.

Abstract

Mts1 (S100A4) protein is a marker of metastatic tumor cells, which is associated with a poor diagnostic prognosis for cancer progression. Therefore, it is important to study the S100A4 gene expression. According to our preliminary data, PHF10, a PBAF remodeling complex component, can play an important role in the transcription regulation of the S100A4 gene. We studied the expression of S100A4 and the total PHF10 protein in some cell lines. We have found that, in the cell lines studied, the PHF10 expression is correlated with the S100A4 expression.

Doklady Biochemistry and Biophysics. 2016;467(1):162-164
pages 162-164 views